Curated Sample Data


Genome
mm9
Antigen Class
TFs and others
Antigen
Pou5f1
Cell type Class
Embryo
Cell type
Embryonic cells

Cell type information


NA
NA

Attributes by Original Data Submitter


Alias
Oct4_AF1759_Dnmt-TKO-mES_Replicate-2_Batch-1
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:29Z
INSDC status
public
SRA accession
ERS1642926
Sample Name
ERS1642926
Title
Oct4 ChIP-seq sample
cell_line
mouse embryonic cell deficient in Dnmt1, Dnmt3a and Dnmt3b

Metadata from Sequence Read Archive

Library Description


library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina HiSeq 4000

External Database Query

Logs in read processing pipeline


Number of total reads
76207010
Reads aligned (%)
97.4
Duplicates removed (%)
19.5
Number of peaks
6502 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA