Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Klf4

Cell type

Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA

Attributes by original data submitter

Sample

Alias
Klf4_AF3640_Dnmt-TKO-mES_Replicate-1_Batch-1
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:29Z
INSDC status
public
SRA accession
ERS1642921
Sample Name
ERS1642921
Title
Klf4 ChIP-seq sample
cell_line
mouse embryonic cell deficient in Dnmt1, Dnmt3a and Dnmt3b

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
53215689
Reads aligned (%)
97.5
Duplicates removed (%)
15.6
Number of peaks
732 (qval < 1E-05)

mm9

Number of total reads
53215689
Reads aligned (%)
97.3
Duplicates removed (%)
15.5
Number of peaks
761 (qval < 1E-05)

Base call quality data from DBCLS SRA