Curated Sample Data


Genome
mm9
Antigen Class
Unclassified
Antigen
Unclassified
Cell type Class
Embryo
Cell type
Embryonic cells

Cell type information


NA
NA

Attributes by Original Data Submitter


Alias
Goat_IgG_sc-2028_Tet-TKO-mES_Batch-1
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:29Z
INSDC status
public
SRA accession
ERS1642916
Sample Name
ERS1642916
Title
Goat IgG ChIP-seq sample
cell_line
mouse embryonic cell deficient in Tet1, Tet2 and Tet3

Metadata from Sequence Read Archive

Library Description


library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina HiSeq 4000

External Database Query

Logs in read processing pipeline


Number of total reads
44300243
Reads aligned (%)
96.9
Duplicates removed (%)
29.2
Number of peaks
523 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA