Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic cells
NA
NA

Attributes by original data submitter

Sample

Alias
Goat_IgG_sc-2028_Dnmt-TKO-mES_Batch-1
ENA checklist
ERC000011
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2017-05-04T17:01:35Z
INSDC last update
2017-03-30T15:04:28Z
INSDC status
public
SRA accession
ERS1642915
Sample Name
ERS1642915
Title
Goat IgG ChIP-seq sample
cell_line
mouse embryonic cell deficient in Dnmt1, Dnmt3a and Dnmt3b

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
56733706
Reads aligned (%)
97.8
Duplicates removed (%)
16.0
Number of peaks
613 (qval < 1E-05)

mm9

Number of total reads
56733706
Reads aligned (%)
97.6
Duplicates removed (%)
15.9
Number of peaks
657 (qval < 1E-05)

Base call quality data from DBCLS SRA