ERX1934189
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
T cells
ArrayExpress-Immunoprecipitate
anti-FLAG
ArrayExpress-Sex
mixed
ArrayExpress-Species
Mus musculus
ENA first public
2017-03-07
ENA last update
2016-09-27
ENA-CHECKLIST
ERC000011
External Id
SAMEA4467435
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2017-03-07T13:52:36Z
INSDC last update
2016-09-27T12:03:27Z
INSDC status
public
Submitter Id
f7f97790-848f-11e6-b105-68b59976a384
common name
house mouse
sample description
CD4
sample name
f7f97790-848f-11e6-b105-68b59976a384

Sequenced DNA Library

library_name
NT862265G
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22706562
Reads aligned (%)
95.2
Duplicates removed (%)
86.1
Number of peaks
99 (qval < 1E-05)

mm9

Number of total reads
22706562
Reads aligned (%)
95.2
Duplicates removed (%)
86.1
Number of peaks
74 (qval < 1E-05)

Base call quality data from DBCLS SRA