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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Xbp1
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
ERX1823623
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Xbp1
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
CD4 T cells
ArrayExpress-Immunoprecipitate
anti-Xbp1
ArrayExpress-Phenotype
Wild type
ArrayExpress-Sex
mixed
ArrayExpress-Species
Mus musculus
ENA first public
2016-12-13
ENA last update
2016-08-17
ENA-CHECKLIST
ERC000011
External Id
SAMEA4384338
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-12-13T11:56:11Z
INSDC last update
2016-08-17T12:31:16Z
INSDC status
public
Submitter Id
2a0059c0-5e66-11e6-b4e1-68b59976a384
common name
house mouse
sample description
Xbp1_ATAC
sample name
2a0059c0-5e66-11e6-b4e1-68b59976a384
Sequenced DNA Library
library_name
NT829368U
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
13583627
Reads aligned (%)
70.9
Duplicates removed (%)
89.7
Number of peaks
70 (qval < 1E-05)
mm9
Number of total reads
13583627
Reads aligned (%)
70.9
Duplicates removed (%)
89.7
Number of peaks
60 (qval < 1E-05)
Base call quality data from
DBCLS SRA