Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Xbp1
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
ERX1823619
Illumina HiSeq 2500 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Xbp1
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
CD4 T cells
ArrayExpress-Immunoprecipitate
anti-Xbp1
ArrayExpress-Phenotype
Wild type
ArrayExpress-Sex
mixed
ArrayExpress-Species
Mus musculus
ENA first public
2016-12-13
ENA last update
2016-08-17
ENA-CHECKLIST
ERC000011
External Id
SAMEA4384401
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-12-13T11:56:11Z
INSDC last update
2016-08-17T13:14:14Z
INSDC status
public
Submitter Id
29e4bb70-5e66-11e6-b4e1-68b59976a384
common name
house mouse
sample description
Xbp1_ChIPmen
sample name
29e4bb70-5e66-11e6-b4e1-68b59976a384
Sequenced DNA Library
library_name
NT829364Q
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
11753052
Reads aligned (%)
87.2
Duplicates removed (%)
50.2
Number of peaks
117 (qval < 1E-05)
mm9
Number of total reads
11753052
Reads aligned (%)
87.1
Duplicates removed (%)
50.3
Number of peaks
88 (qval < 1E-05)
Base call quality data from
DBCLS SRA