ERX1818270
NextSeq 500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryo
Cell type
Mitotic cycle 9-13
NA
NA

Attributes by original data submitter

Sample

ENA first public
2017-07-13
ENA last update
2017-07-12
ENA-CHECKLIST
ERC000011
External Id
SAMEA20401918
INSDC center alias
MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS
INSDC center name
MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS
INSDC first public
2017-07-13T17:02:58Z
INSDC last update
2017-07-12T09:56:30Z
INSDC status
public
Submitter Id
487_H3K27me3_c9-13_WT_rep3
common name
fruit fly
dev stage
embryos cycle 9-13
sample name
487_H3K27me3_c9-13_WT_rep3

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext Ultra

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
30277713
Reads aligned (%)
45.3
Duplicates removed (%)
72.1
Number of peaks
1617 (qval < 1E-05)

dm3

Number of total reads
30277713
Reads aligned (%)
46.0
Duplicates removed (%)
69.2
Number of peaks
2898 (qval < 1E-05)

Base call quality data from DBCLS SRA