ERX181465
Characterization of the p53 cistrome - DNA binding cooperativity dissects p53's tumor suppressor functions

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

ENA first public
2014-02-14
ENA last update
2018-03-08
External Id
SAMEA2042410
INSDC center alias
University of Marburg
INSDC center name
University of Marburg
INSDC first public
2014-02-14T17:02:00Z
INSDC last update
2018-03-08T16:10:48Z
INSDC status
public
Submitter Id
E-MTAB-1394:SAOS+p53wt
broker name
ArrayExpress
cell line
SAOS
common name
human
immunoprecipitate
Anti-p53, sc-126, Santa-cruz
sample name
E-MTAB-1394:SAOS+p53wt
transfection
p53wt

Sequenced DNA Library

library_name
SAOS+p53wt
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was perfomed with a p53-specific antibody. The DNA was purified with the Qiaquick PCR purification Kit (Qiagen).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
126501057
Reads aligned (%)
10.3
Duplicates removed (%)
83.6
Number of peaks
13908 (qval < 1E-05)

hg38

Number of total reads
126501057
Reads aligned (%)
11.3
Duplicates removed (%)
82.2
Number of peaks
12370 (qval < 1E-05)

Base call quality data from DBCLS SRA