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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Saos-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX181464
Characterization of the p53 cistrome - DNA binding cooperativity dissects p53's tumor suppressor functions
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Bone
Cell type
Saos-2
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma
Attributes by original data submitter
Sample
ENA first public
2014-02-14
ENA last update
2018-03-08
External Id
SAMEA2042409
INSDC center alias
University of Marburg
INSDC center name
University of Marburg
INSDC first public
2014-02-14T17:02:00Z
INSDC last update
2018-03-08T16:10:48Z
INSDC status
public
Submitter Id
E-MTAB-1394:SAOS input
broker name
ArrayExpress
cell line
SAOS
common name
human
sample name
E-MTAB-1394:SAOS input
Sequenced DNA Library
library_name
SAOS input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was perfomed with a p53-specific antibody. The DNA was purified with the Qiaquick PCR purification Kit (Qiagen).
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
205180114
Reads aligned (%)
92.2
Duplicates removed (%)
82.6
Number of peaks
6690 (qval < 1E-05)
hg19
Number of total reads
205180114
Reads aligned (%)
91.4
Duplicates removed (%)
84.4
Number of peaks
5731 (qval < 1E-05)
Base call quality data from
DBCLS SRA