Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

ENA first public
2017-06-15
ENA last update
2016-10-17
ENA-CHECKLIST
ERC000011
External Id
SAMEA4515524
INSDC center alias
Scientist, Genetics & Genome Biology Program, SickKids Research Institute Assistant Professor, Department of Molecular Genetics, University of Toronto
INSDC center name
Scientist, Genetics & Genome Biology Program, SickKids Research Institute Assistant Professor, Department of Molecular Genetics, University of Toronto
INSDC first public
2017-06-15T17:02:09Z
INSDC last update
2016-10-17T14:21:08Z
INSDC status
public
Submitter Id
E-MTAB-5148:WL380
broker name
ArrayExpress
cell type
HUVEC cell
common name
human
individual
12508
sample name
E-MTAB-5148:WL380

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
22088949
Reads aligned (%)
96.4
Duplicates removed (%)
4.0
Number of peaks
972 (qval < 1E-05)

hg19

Number of total reads
22088949
Reads aligned (%)
95.7
Duplicates removed (%)
5.7
Number of peaks
964 (qval < 1E-05)

Base call quality data from DBCLS SRA