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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX159400
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
ENA-FIRST-PUBLIC
2013-01-18
ENA-LAST-UPDATE
2012-10-25
ENA-SUBMISSION-TOOL
SRA-Webin
External Id
SAMEA1695336
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-25T12:57:38Z
INSDC status
public
Submitter Id
IgG_control_E2F7+HNF4A
common name
human
sample name
IgG_control_E2F7+HNF4A
Sequenced DNA Library
library_name
IgG_control_E2F7+HNF4A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
16977511
Reads aligned (%)
94.4
Duplicates removed (%)
18.4
Number of peaks
546 (qval < 1E-05)
hg19
Number of total reads
16977511
Reads aligned (%)
93.7
Duplicates removed (%)
19.4
Number of peaks
750 (qval < 1E-05)
Base call quality data from
DBCLS SRA