Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HNF4A

Cell type

Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

Alias
LoVo_HNF4A
Description
Chromatin immunoprecipitation of HNF4A transcription factor from LoVo cells. Antibody used in the assay was from Santa Cruz (sc-8987)
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-24T15:59:46Z
INSDC status
public
SRA accession
ERS183066
Sample Name
ERS183066
Title
LoVo_HNF4A

Sequenced DNA Library

library_name
LoVo_HNF4A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
7632245
Reads aligned (%)
93.2
Duplicates removed (%)
2.5
Number of peaks
395 (qval < 1E-05)

hg38

Number of total reads
7632245
Reads aligned (%)
95.2
Duplicates removed (%)
1.4
Number of peaks
329 (qval < 1E-05)

Base call quality data from DBCLS SRA