ERX159250
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA-FIRST-PUBLIC
2013-01-18
ENA-LAST-UPDATE
2012-10-24
ENA-SUBMISSION-TOOL
SRA-Webin
External Id
SAMEA1695340
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-24T15:59:46Z
INSDC status
public
Submitter Id
LoVo_HNF4A
common name
human
sample name
LoVo_HNF4A

Sequenced DNA Library

library_name
LoVo_HNF4A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
7632245
Reads aligned (%)
95.7
Duplicates removed (%)
2.5
Number of peaks
395 (qval < 1E-05)

hg38

Number of total reads
7632245
Reads aligned (%)
96.5
Duplicates removed (%)
1.4
Number of peaks
329 (qval < 1E-05)

Base call quality data from DBCLS SRA