Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HNF1A

Cell type

Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

Alias
LoVo_HNF1A
Description
Chromatin immunoprecipitation of HNF1A transcription factor from LoVo cells. Antibody used in the assay was from Santa Cruz (sc-22840 X)
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-24T15:52:00Z
INSDC status
public
SRA accession
ERS183065
Sample Name
ERS183065
Title
LoVo_HNF1A

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
6503907
Reads aligned (%)
45.9
Duplicates removed (%)
7.3
Number of peaks
1348 (qval < 1E-05)

hg38

Number of total reads
6503907
Reads aligned (%)
46.3
Duplicates removed (%)
7.0
Number of peaks
1314 (qval < 1E-05)

Base call quality data from DBCLS SRA