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Colocalization
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Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HNF1A
wikigenes
PDBj
CellType: LoVo
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX159248
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HNF1A
Cell type
Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
Alias
LoVo_HNF1A
Description
Chromatin immunoprecipitation of HNF1A transcription factor from LoVo cells. Antibody used in the assay was from Santa Cruz (sc-22840 X)
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-24T15:52:00Z
INSDC status
public
SRA accession
ERS183065
Sample Name
ERS183065
Title
LoVo_HNF1A
Sequenced DNA Library
library_name
LoVo_HNF1A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
6351041
Reads aligned (%)
47.4
Duplicates removed (%)
7.2
Number of peaks
1387 (qval < 1E-05)
hg38
Number of total reads
6351041
Reads aligned (%)
47.8
Duplicates removed (%)
6.9
Number of peaks
1374 (qval < 1E-05)
Base call quality data from
DBCLS SRA