Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GRHL1

Cell type

Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

Alias
LoVo_GRHL1
Description
Chromatin immunoprecipitation of GRHL1 transcription factor from LoVo cell line. Antibody used in the assay was Abcam (ab77762).
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-24T15:44:25Z
INSDC status
public
SRA accession
ERS183064
Sample Name
ERS183064
Title
LoVo_GRHL1

Sequenced DNA Library

library_name
LoVo_GRHL1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
11867892
Reads aligned (%)
75.1
Duplicates removed (%)
21.6
Number of peaks
685 (qval < 1E-05)

hg38

Number of total reads
11867892
Reads aligned (%)
76.8
Duplicates removed (%)
20.5
Number of peaks
694 (qval < 1E-05)

Base call quality data from DBCLS SRA