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For hg19
Colocalization
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GMEB2
wikigenes
PDBj
CellType: LoVo
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX157408
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GMEB2
Cell type
Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
Alias
LoVo_GMEB2_Rabbit3
Description
Chromatin immuno-precipitation of GMEB2 transcription factor from LoVo cell line using Abcam ab50592 - antibody.
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-18T10:53:27Z
INSDC status
public
SRA accession
ERS182608
Sample Name
ERS182608
Title
LoVo_GMEB2_Rabbit
Sequenced DNA Library
library_name
LoVo_GMEB2_Rabbit
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
5498479
Reads aligned (%)
68.4
Duplicates removed (%)
18.2
Number of peaks
1404 (qval < 1E-05)
hg38
Number of total reads
5498479
Reads aligned (%)
69.9
Duplicates removed (%)
17.4
Number of peaks
1391 (qval < 1E-05)
Base call quality data from
DBCLS SRA