ERX157408
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

ENA-FIRST-PUBLIC
2013-01-18
ENA-LAST-UPDATE
2012-10-18
ENA-SUBMISSION-TOOL
SRA-Webin
External Id
SAMEA1695342
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-18T10:53:27Z
INSDC status
public
Submitter Id
LoVo_GMEB2_Rabbit3
common name
human
sample name
LoVo_GMEB2_Rabbit3

Sequenced DNA Library

library_name
LoVo_GMEB2_Rabbit
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
5498479
Reads aligned (%)
84.5
Duplicates removed (%)
17.4
Number of peaks
1391 (qval < 1E-05)

hg19

Number of total reads
5498479
Reads aligned (%)
83.7
Duplicates removed (%)
18.2
Number of peaks
1404 (qval < 1E-05)

Base call quality data from DBCLS SRA