ERX157408
no title

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GMEB2

Cell type

Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

Alias
LoVo_GMEB2_Rabbit3
Description
Chromatin immuno-precipitation of GMEB2 transcription factor from LoVo cell line using Abcam ab50592 - antibody.
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-18T10:53:27Z
INSDC status
public
SRA accession
ERS182608
Sample Name
ERS182608
Title
LoVo_GMEB2_Rabbit

Sequenced DNA Library

library_name
LoVo_GMEB2_Rabbit
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
5498479
Reads aligned (%)
68.4
Duplicates removed (%)
18.2
Number of peaks
1404 (qval < 1E-05)

hg38

Number of total reads
5498479
Reads aligned (%)
69.9
Duplicates removed (%)
17.4
Number of peaks
1391 (qval < 1E-05)

Base call quality data from DBCLS SRA