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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: E2F7
wikigenes
PDBj
CellType: LoVo
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
ERX157273
no title
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
E2F7
Cell type
Cell type Class
Digestive tract
Cell type
LoVo
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
Alias
ChIP-seq_LoVo_E2F71
Description
Chromatin immunoprecipitation of transcription factor E2F7 from LoVo cell line LoVo_E2F7
INSDC center alias
KI-BN
INSDC center name
Department of Biosciences and Nutrition, Karolinska Institutet, Sweden
INSDC first public
2013-01-18T09:17:04Z
INSDC last update
2012-10-17T21:06:27Z
INSDC status
public
SRA accession
ERS182602
Sample Name
ERS182602
Title
ChIP-seq_LoVo_E2F7
Sequenced DNA Library
library_name
ChIP-seq_LoVo_E2F7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
33103524
Reads aligned (%)
63.5
Duplicates removed (%)
19.2
Number of peaks
3498 (qval < 1E-05)
hg38
Number of total reads
33103524
Reads aligned (%)
64.6
Duplicates removed (%)
18.3
Number of peaks
3653 (qval < 1E-05)
Base call quality data from
DBCLS SRA