Antigen

Antigen Class

No description

Antigen

NA

Cell type

Cell type Class

Blood

Cell type

Alpha-beta T-cell

NA

NA

Sample

ENA first public

2016-05-19

ENA last update

2016-06-20

ENA-CHECKLIST

ERC000011

External Id

SAMEA3855947

INSDC center alias

SC

INSDC center name

Wellcome Sanger Institute

INSDC first public

2016-05-19T15:53:29Z

INSDC last update

2016-06-20T15:22:13Z

INSDC status

public

SAMPLE_ONTOLOGY_URI

http://purl.obolibrary.org/obo/CL_0000624

Submitter Id

41c6a190-ecc0-11e4-bfee-3c4a9275d6c6

biomaterial provider

Sanger Institute/Cambridge University

biomaterial type

Primary Cell

cell type

CD4-positive, alpha-beta T cell

common name

house mouse

donor age

6 - 8 weeks

donor sex

male

markers

CD4-positive_CD62L-positive_CD44-low_CD25-negative

molecule

genomic DNA

phenotype

CL:0000624;PATO:0000461

pool id

SC_Pool_6j_ChIP_Input_T_cell_male_1

sample name

41c6a190-ecc0-11e4-bfee-3c4a9275d6c6

strain

C57BL/6J

subject id

SC_Pool_6j_ChIP_Input_T_cell_male_1

tissue type

Spleen

Sequenced DNA Library

library_name

13954893

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-Seq Auto

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

15256949

Reads aligned (%)

98.9

Duplicates removed (%)

8.6

Number of peaks

187 (qval < 1E-05)

mm9

Number of total reads

15256949

Reads aligned (%)

98.7

Duplicates removed (%)

8.9

Number of peaks

149 (qval < 1E-05)