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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Alpha-beta T-cell
ATCC
MeSH
RIKEN BRC
ERX1489049
Illumina HiSeq 2000 paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
Alpha-beta T-cell
NA
NA
Attributes by original data submitter
Sample
ENA first public
2016-05-19
ENA last update
2016-06-20
ENA-CHECKLIST
ERC000011
External Id
SAMEA3855946
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-19T15:53:29Z
INSDC last update
2016-06-20T15:22:13Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/CL_0000624
Submitter Id
41c011e0-ecc0-11e4-bfee-3c4a9275d6c6
biomaterial provider
Sanger Institute/Cambridge University
biomaterial type
Primary Cell
cell type
CD4-positive, alpha-beta T cell
common name
house mouse
donor age
6 - 8 weeks
donor sex
male
markers
CD4-positive_CD62L-positive_CD44-low_CD25-negative
molecule
genomic DNA
phenotype
CL:0000624;PATO:0000461
pool id
SC_Pool_6j_ChIP_H3K36me3_T_cell_male_1
sample name
41c011e0-ecc0-11e4-bfee-3c4a9275d6c6
strain
C57BL/6J
subject id
SC_Pool_6j_ChIP_H3K36me3_T_cell_male_1
tissue type
Spleen
Sequenced DNA Library
library_name
13954881
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-Seq Auto
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
15470162
Reads aligned (%)
99.1
Duplicates removed (%)
7.1
Number of peaks
172 (qval < 1E-05)
mm9
Number of total reads
15470162
Reads aligned (%)
99.0
Duplicates removed (%)
7.2
Number of peaks
143 (qval < 1E-05)
Base call quality data from
DBCLS SRA