ERX1489044
Illumina HiSeq 2500 paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Alpha-beta T-cell
NA
NA

Attributes by original data submitter

Sample

ENA first public
2016-05-19
ENA last update
2016-06-20
ENA-CHECKLIST
ERC000011
External Id
SAMEA3855937
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-05-19T15:53:29Z
INSDC last update
2016-06-20T15:22:13Z
INSDC status
public
SAMPLE_ONTOLOGY_URI
http://purl.obolibrary.org/obo/CL_0000624
Submitter Id
dfb31760-7643-11e4-8102-68b59976a382
biomaterial provider
Sanger Institute/Cambridge University
biomaterial type
Primary Cell
cell type
CD4-positive, alpha-beta T cell
common name
house mouse
donor age
6 - 8 weeks
donor sex
male
markers
CD4-positive_CD62L-positive_CD44-low_CD25-negative
molecule
genomic DNA
phenotype
CL:0000624;PATO:0000461
pool id
SC_Pool_6j_ChIP_Input_T_cell_male_2
sample name
dfb31760-7643-11e4-8102-68b59976a382
strain
C57BL/6J
subject id
SC_Pool_6j_ChIP_Input_T_cell_male_2
tissue type
Spleen

Sequenced DNA Library

library_name
12805741
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17414711
Reads aligned (%)
98.7
Duplicates removed (%)
7.5
Number of peaks
161 (qval < 1E-05)

mm9

Number of total reads
17414711
Reads aligned (%)
98.6
Duplicates removed (%)
7.8
Number of peaks
128 (qval < 1E-05)

Base call quality data from DBCLS SRA