ERX1376822
Illumina MiSeq paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf4

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CD4+ T cells
ArrayExpress-Immunoprecipitate
anti-Irf4
ArrayExpress-Phenotype
Wild Type
ArrayExpress-Sex
male
ArrayExpress-Species
Mus Musculus
ENA first public
2016-03-08
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3670584
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-03-08T10:15:27Z
INSDC last update
2018-03-09T09:27:02Z
INSDC status
public
Submitter Id
ATACx_Irf4-sc-2467736
common name
house mouse
sample description
ATACx_Irf4
sample name
ATACx_Irf4-sc-2467736

Sequenced DNA Library

library_name
15320302
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3693909
Reads aligned (%)
99.2
Duplicates removed (%)
35.9
Number of peaks
1307 (qval < 1E-05)

mm9

Number of total reads
3693909
Reads aligned (%)
99.2
Duplicates removed (%)
36.0
Number of peaks
1293 (qval < 1E-05)

Base call quality data from DBCLS SRA