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For mm10
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Irf4
wikigenes
PDBj
CellType: CD4+ T cells
ATCC
MeSH
RIKEN BRC
ERX1288410
Illumina MiSeq paired end sequencing
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Irf4
Cell type
Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA
Attributes by original data submitter
Sample
ArrayExpress-CellType
CD4+ T cell
ArrayExpress-DevelopmentalStage
Th2
ArrayExpress-Immunoprecipitate
IRF4 M17 (sc-6059)
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2016-01-19
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3565987
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-19T09:19:06Z
INSDC last update
2018-03-09T08:34:06Z
INSDC status
public
Submitter Id
Irf4_100K-sc-2416534
common name
house mouse
sample description
Irf4_100K
sample name
Irf4_100K-sc-2416534
strain
C57BL/6 JAX
Sequenced DNA Library
library_name
15005825
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only
Sequencing Platform
instrument_model
Illumina MiSeq
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
3096210
Reads aligned (%)
76.0
Duplicates removed (%)
7.0
Number of peaks
337 (qval < 1E-05)
mm9
Number of total reads
3096210
Reads aligned (%)
76.0
Duplicates removed (%)
7.3
Number of peaks
328 (qval < 1E-05)
Base call quality data from
DBCLS SRA