ERX1288407
Illumina MiSeq paired end sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf4

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
CD4+ T cell
ArrayExpress-DevelopmentalStage
Th2
ArrayExpress-Immunoprecipitate
IRF4 M17 (sc-6059)
ArrayExpress-Sex
male
ArrayExpress-Species
Mus musculus
ENA first public
2016-01-19
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3565989
INSDC center alias
SC
INSDC center name
Wellcome Sanger Institute
INSDC first public
2016-01-19T09:19:06Z
INSDC last update
2018-03-09T06:52:39Z
INSDC status
public
Submitter Id
Irf4_10K-sc-2416535
common name
house mouse
sample description
Irf4_10K
sample name
Irf4_10K-sc-2416535
strain
C57BL/6 JAX

Sequenced DNA Library

library_name
15005826
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nextera dual index qPCR only

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3835509
Reads aligned (%)
91.3
Duplicates removed (%)
8.4
Number of peaks
79 (qval < 1E-05)

mm9

Number of total reads
3835509
Reads aligned (%)
91.3
Duplicates removed (%)
8.8
Number of peaks
67 (qval < 1E-05)

Base call quality data from DBCLS SRA