Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Neural Stem Cells
MeSH Description
Self-renewing cells that generate the main phenotypes of the nervous system in both the embryo and adult. Neural stem cells are precursors to both NEURONS and NEUROGLIA.

Attributes by original data submitter

Sample

ENA first public
2017-01-06
ENA last update
2015-12-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3699132
INSDC center alias
The Francis Crick Institute
INSDC center name
The Francis Crick Institute
INSDC first public
2017-01-06T17:01:22Z
INSDC last update
2015-12-08T18:22:43Z
INSDC status
public
Submitter Id
input_rep3
cell type
neural stem cells
common name
house mouse
sample name
input_rep3

Sequenced DNA Library

library_name
input_rep3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared from 5ng DNA using Illumina TruSeq ChIP Sample Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
51268072
Reads aligned (%)
95.5
Duplicates removed (%)
37.5
Number of peaks
457 (qval < 1E-05)

mm9

Number of total reads
51268072
Reads aligned (%)
95.3
Duplicates removed (%)
37.6
Number of peaks
492 (qval < 1E-05)

Base call quality data from DBCLS SRA