Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Neural Stem Cells
MeSH Description
Self-renewing cells that generate the main phenotypes of the nervous system in both the embryo and adult. Neural stem cells are precursors to both NEURONS and NEUROGLIA.

Attributes by original data submitter

Sample

ENA first public
2017-01-06
ENA last update
2015-12-08
ENA-CHECKLIST
ERC000011
External Id
SAMEA3699127
INSDC center alias
The Francis Crick Institute
INSDC center name
The Francis Crick Institute
INSDC first public
2017-01-06T17:01:21Z
INSDC last update
2015-12-08T18:22:42Z
INSDC status
public
Submitter Id
Zfp609-V5_rep2
cell type
neural stem cells
common name
house mouse
sample name
Zfp609-V5_rep2

Sequenced DNA Library

library_name
Zfp609_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared from 10ng DNA using Illumina ChIP-Seq Sample Prep Kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
33148493
Reads aligned (%)
36.3
Duplicates removed (%)
34.8
Number of peaks
5221 (qval < 1E-05)

mm9

Number of total reads
33148493
Reads aligned (%)
36.2
Duplicates removed (%)
35.1
Number of peaks
5209 (qval < 1E-05)

Base call quality data from DBCLS SRA