Curated Sample Data


Genome
mm9
Antigen Class
TFs and others
Antigen
Jun
Cell type Class
Blood
Cell type
HPC-7

Cell type information


NA
NA

Attributes by Original Data Submitter


Alias
E-MTAB-3954:Jun_HPC7
Broker name
ArrayExpress
Description
Protocols: HPC-7 cells (Pinto do O et al., 1998) were grown in Stem Cell Factor. Hi-C and CHi-C was performed as described previously (Schoenfelder et al., 2015). Sequencing libraries were prepared according to the manufactures instructions.
ENA checklist
ERC000011
INSDC center alias
University of Cambridge
INSDC center name
University of Cambridge
INSDC first public
2016-02-29T17:01:41Z
INSDC last update
2018-03-09T09:21:13Z
INSDC status
public
SRA accession
ERS939113
Sample Name
ERS939113
Title
Jun_HPC7
cell line
HPC-7
cell type
haematopoietic stem/progenitor cell
organism
Mus musculus
sequencing type
Hi-C sequencing

Metadata from Sequence Read Archive

Library Description


library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Platform Information


instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

External Database Query

Logs in read processing pipeline


Number of total reads
34342503
Reads aligned (%)
93.5
Duplicates removed (%)
13.9
Number of peaks
1185 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA