Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
HPC-7
NA
NA

Attributes by original data submitter

Sample

Alias
E-MTAB-3954:H3K27me3_HPC7
Broker name
ArrayExpress
Description
Protocols: HPC-7 cells (Pinto do O et al., 1998) were grown in Stem Cell Factor. Hi-C and CHi-C was performed as described previously (Schoenfelder et al., 2015). Sequencing libraries were prepared according to the manufactures instructions.
ENA checklist
ERC000011
INSDC center alias
University of Cambridge
INSDC center name
University of Cambridge
INSDC first public
2016-02-29T17:01:41Z
INSDC last update
2018-03-09T09:21:13Z
INSDC status
public
SRA accession
ERS939103
Sample Name
ERS939103
Title
H3K27me3_HPC7
cell line
HPC-7
cell type
haematopoietic stem/progenitor cell
organism
Mus musculus
sequencing type
Hi-C sequencing

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
38839451
Reads aligned (%)
76.6
Duplicates removed (%)
14.3
Number of peaks
9705 (qval < 1E-05)

mm9

Number of total reads
38839451
Reads aligned (%)
76.5
Duplicates removed (%)
14.4
Number of peaks
9696 (qval < 1E-05)

Base call quality data from DBCLS SRA