ERX1055969
Illumina HiSeq 2500 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
SUM 44PE
Primary Tissue
Breast
Tissue Diagnosis
Unknown

Attributes by original data submitter

Sample

ENA first public
2015-10-10
ENA last update
2015-08-11
ENA-CHECKLIST
ERC000011
External Id
SAMEA3501447
INSDC center alias
Medical University of South Carolina
INSDC center name
Medical University of South Carolina
INSDC first public
2015-10-10T17:01:14Z
INSDC last update
2015-08-11T04:22:01Z
INSDC status
public
Submitter Id
1287_rep3_SUM44_shLacZ_no_estrogen_ERa_ChIP
cell line
SUM-44PE
common name
human
sample name
1287_rep3_SUM44_shLacZ_no_estrogen_ERa_ChIP

Sequenced DNA Library

library_name
unspecified
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Rubicon Genomics Thru-PlexFD standard protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
46882062
Reads aligned (%)
98.0
Duplicates removed (%)
57.6
Number of peaks
11063 (qval < 1E-05)

hg38

Number of total reads
46882062
Reads aligned (%)
98.8
Duplicates removed (%)
56.2
Number of peaks
11034 (qval < 1E-05)

Base call quality data from DBCLS SRA