Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RC-K8
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma B-cell

Attributes by original data submitter

Sample

ENA first public
2015-12-01
ENA last update
2018-03-09
ENA-CHECKLIST
ERC000011
External Id
SAMEA3481921
INSDC center alias
Institute of Molecular Cancer Research, University of Zurich
INSDC center name
Institute of Molecular Cancer Research, University of Zurich
INSDC first public
2015-12-01T17:02:06Z
INSDC last update
2018-03-09T02:14:53Z
INSDC status
public
Submitter Id
E-MTAB-3741:RC-K8 WCE
broker name
ArrayExpress
cell line
RC-K8
common name
human
disease
diffuse large B-cell lymphoma
immunoprecipitate
whole cell extract
sample name
E-MTAB-3741:RC-K8 WCE
sex
male

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
29707229
Reads aligned (%)
97.3
Duplicates removed (%)
18.3
Number of peaks
1129 (qval < 1E-05)

hg19

Number of total reads
29707229
Reads aligned (%)
96.4
Duplicates removed (%)
20.1
Number of peaks
770 (qval < 1E-05)

Base call quality data from DBCLS SRA