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For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Salivary glands
ATCC
MeSH
RIKEN BRC
ERX102372
PolII Rpb3 ChIP-seq data from D. melanogaster
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Larvae
Cell type
Salivary glands
NA
NA
Attributes by original data submitter
Sample
ENA first public
2012-08-01
ENA last update
2018-03-08
External Id
SAMEA1487323
INSDC center alias
EMBL Heidelberg
INSDC center name
EMBL Heidelberg
INSDC first public
2012-08-01T17:00:54Z
INSDC last update
2018-03-08T15:46:35Z
INSDC status
public
Submitter Id
E-MTAB-1112:Input_MSL2_RNAi_maleB
broker name
ArrayExpress
common name
fruit fly
developmental stage
third instar larva
genotype
MSL2 RNAi
organism part
salivary gland
sample name
E-MTAB-1112:Input_MSL2_RNAi_maleB
sex
male
Sequenced DNA Library
library_name
Input_MSL2_RNAi_maleB
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Drosophila larva were grown at 25 C purification protocol is detailed in Conrad et al.
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
28974261
Reads aligned (%)
95.2
Duplicates removed (%)
10.0
Number of peaks
0 (qval < 1E-05)
dm3
Number of total reads
28974261
Reads aligned (%)
95.2
Duplicates removed (%)
9.4
Number of peaks
0 (qval < 1E-05)
Base call quality data from
DBCLS SRA