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For dm6
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: S2
ATCC
MeSH
RIKEN BRC
ERX102367
PolII Rpb3 ChIP-seq data from D. melanogaster
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage
Attributes by original data submitter
Sample
ENA first public
2012-08-01
ENA last update
2018-03-08
External Id
SAMEA1487332
INSDC center alias
EMBL Heidelberg
INSDC center name
EMBL Heidelberg
INSDC first public
2012-08-01T17:00:54Z
INSDC last update
2018-03-08T15:46:32Z
INSDC status
public
Submitter Id
E-MTAB-1112:PolII_S2_Rpb3_A_raw_reads
broker name
ArrayExpress
cell line
S2
common name
fruit fly
sample name
E-MTAB-1112:PolII_S2_Rpb3_A_raw_reads
Sequenced DNA Library
library_name
PolII_S2_Rpb3_A_raw_reads
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Drosophila larva were grown at 25 C purification protocol is detailed in Conrad et al.
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
32953438
Reads aligned (%)
98.3
Duplicates removed (%)
41.8
Number of peaks
14387 (qval < 1E-05)
dm3
Number of total reads
32953438
Reads aligned (%)
98.3
Duplicates removed (%)
40.3
Number of peaks
15196 (qval < 1E-05)
Base call quality data from
DBCLS SRA