Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

ENA first public
2012-08-01
ENA last update
2018-03-08
External Id
SAMEA1487332
INSDC center alias
EMBL Heidelberg
INSDC center name
EMBL Heidelberg
INSDC first public
2012-08-01T17:00:54Z
INSDC last update
2018-03-08T15:46:32Z
INSDC status
public
Submitter Id
E-MTAB-1112:PolII_S2_Rpb3_A_raw_reads
broker name
ArrayExpress
cell line
S2
common name
fruit fly
sample name
E-MTAB-1112:PolII_S2_Rpb3_A_raw_reads

Sequenced DNA Library

library_name
PolII_S2_Rpb3_A_raw_reads
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Drosophila larva were grown at 25 C purification protocol is detailed in Conrad et al.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm6

Number of total reads
32953438
Reads aligned (%)
98.3
Duplicates removed (%)
41.8
Number of peaks
14387 (qval < 1E-05)

dm3

Number of total reads
32953438
Reads aligned (%)
98.3
Duplicates removed (%)
40.3
Number of peaks
15196 (qval < 1E-05)

Base call quality data from DBCLS SRA