Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4

Cell type

Cell type Class
Larvae
Cell type
Salivary glands
NA
NA

Attributes by original data submitter

Sample

ENA first public
2012-05-14
ENA last update
2018-03-08
External Id
SAMEA1322614
INSDC center alias
EMBL Heidelberg
INSDC center name
EMBL Heidelberg
INSDC first public
2012-05-14T11:50:36Z
INSDC last update
2018-03-08T15:47:02Z
INSDC status
public
Submitter Id
E-MTAB-911:H4_female_wt_reads
broker name
ArrayExpress
common name
fruit fly
developmental stage
3rd instar larva
genotype
wild_type
immunoprecipitate
anti-histoneH4
organism part
salivary gland
sample name
E-MTAB-911:H4_female_wt_reads
sex
female

Sequenced DNA Library

library_name
H4_female_wt_reads
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq purification protocol is detailed in Conrad et al.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm6

Number of total reads
12727549
Reads aligned (%)
92.9
Duplicates removed (%)
13.8
Number of peaks
0 (qval < 1E-05)

dm3

Number of total reads
12727549
Reads aligned (%)
93.0
Duplicates removed (%)
13.8
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA