Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

ENA first public
2012-12-13
ENA last update
2018-03-08
External Id
SAMEA1570934
INSDC center alias
Cancer Research UK
INSDC center name
Cancer Research UK
INSDC first public
2012-12-13T17:01:35Z
INSDC last update
2018-03-08T15:45:58Z
INSDC status
public
Submitter Id
E-MTAB-1104:hsaCRI1
age
56 year
broker name
ArrayExpress
common name
human
developmental stage
adult
genotype
wild type
individual
hsaCRI1
organism part
liver
sample name
E-MTAB-1104:hsaCRI1
sex
male

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
22937534
Reads aligned (%)
95.6
Duplicates removed (%)
6.6
Number of peaks
29640 (qval < 1E-05)

hg19

Number of total reads
22937534
Reads aligned (%)
94.9
Duplicates removed (%)
7.4
Number of peaks
29625 (qval < 1E-05)

Base call quality data from DBCLS SRA