Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Mef2

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

Alias
MM-0002_Sample_0020
Description
Mef2 ChIP biological replicate 1
INSDC center alias
EMBL
INSDC center name
European Molecular Biology Laboratory
INSDC first public
2012-01-04T16:55:12Z
INSDC last update
2013-11-04T20:04:51Z
INSDC status
public
SRA accession
ERS025557
Sample Name
ERS025557
Title
ChIP Mef2 replicate 1

Sequenced DNA Library

library_name
Mef2_R1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Solexa protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
25592798
Reads aligned (%)
68.6
Duplicates removed (%)
29.1
Number of peaks
4465 (qval < 1E-05)

dm6

Number of total reads
25592798
Reads aligned (%)
64.6
Duplicates removed (%)
32.9
Number of peaks
4438 (qval < 1E-05)

Base call quality data from DBCLS SRA