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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: NA
ATCC
MeSH
RIKEN BRC
ERX011423
Illumina GAIIx single end ChIP-Seq of Drosophila melanogaster
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
No description
Cell type
NA
NA
NA
Attributes by original data submitter
Sample
External Id
SAMEA1027620
INSDC center alias
EMBL
INSDC center name
European Molecular Biology Laboratory
INSDC first public
2012-01-04T16:55:12Z
INSDC last update
2013-11-04T20:04:51Z
INSDC status
public
Submitter Id
MM-0002_Sample_0019
common name
fruit fly
sample name
MM-0002_Sample_0019
Sequenced DNA Library
library_name
BiTS_Mef2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Solexa protocol
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
26109729
Reads aligned (%)
96.1
Duplicates removed (%)
43.0
Number of peaks
5801 (qval < 1E-05)
dm3
Number of total reads
26109729
Reads aligned (%)
96.5
Duplicates removed (%)
39.8
Number of peaks
6422 (qval < 1E-05)
Base call quality data from
DBCLS SRA