DRX223746
Illumina NovaSeq 6000 paired end sequencing of SAMD00231553

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
KNS-42
Primary Tissue
Brain
Tissue Diagnosis
Glioma

Attributes by original data submitter

Sample

sample_name
KNS-42_G34V_delta1_Input
biomaterial_provider
JCRB cell bank
cell_line
KNS-42
cell_type
glioma
genotype
G34V knocked out
technical_replicate
1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
SMARTer ThruPLEX DNA-seq Kit (Takara Bio)

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28124296
Reads aligned (%)
78.3
Duplicates removed (%)
4.2
Number of peaks
481 (qval < 1E-05)

hg19

Number of total reads
28124296
Reads aligned (%)
77.7
Duplicates removed (%)
4.3
Number of peaks
218 (qval < 1E-05)

Base call quality data from DBCLS SRA