Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_name
TNF_K562
age
53
cell_line
K-562
disease
chronic myelogenous leukemia
sex
female
tissue_type
bone marrow

Sequenced DNA Library

library_name
TNF_NFkB
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

hg38

Number of total reads
17628518
Reads aligned (%)
99.4
Duplicates removed (%)
4.8
Number of peaks
521 (qval < 1E-05)

hg19

Number of total reads
17628518
Reads aligned (%)
98.8
Duplicates removed (%)
5.8
Number of peaks
551 (qval < 1E-05)

Base call quality data from DBCLS SRA