DRX156348
Illumina MiSeq paired end sequencing of SAMD00158933

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MGMT

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

sample_name
U87-MGMT-siCont-ChIP-2
biological_replicate
biological replicate2
cell_line
U87
cell_type
human GBM

Sequenced DNA Library

library_name
Illumina MiSeq paired end sequencing of SAMD00158933
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
"sonication, adapter ligation, PCR with NEB Next Ultra5 DNA Prep Kit for Illumina"

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11655786
Reads aligned (%)
99.1
Duplicates removed (%)
0.5
Number of peaks
13649 (qval < 1E-05)

hg19

Number of total reads
11655786
Reads aligned (%)
98.8
Duplicates removed (%)
0.5
Number of peaks
13599 (qval < 1E-05)

Base call quality data from DBCLS SRA