DRX156329
Illumina MiSeq paired end sequencing of SAMD00158932

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MGMT

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

sample_name
U87-MGMT-siCont-ChIP-1
biological_replicate
biological replicate1
cell_line
U87
cell_type
human GBM

Sequenced DNA Library

library_name
Illumina MiSeq paired end sequencing of SAMD00158932
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
"sonication, adapter ligation, PCR with NEB Next Ultra4 DNA Prep Kit for Illumina"

Sequencing Platform

instrument_model
Illumina MiSeq

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8105187
Reads aligned (%)
98.5
Duplicates removed (%)
0.3
Number of peaks
199 (qval < 1E-05)

hg19

Number of total reads
8105187
Reads aligned (%)
97.7
Duplicates removed (%)
0.3
Number of peaks
170 (qval < 1E-05)

Base call quality data from DBCLS SRA