DRX144853
NextSeq 500 sequencing of SAMD00144947

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX2

Cell type

Cell type Class
Blood
Cell type
CAL-1
NA
NA

Attributes by original data submitter

Sample

sample_name
CAL1-RUNX2-IP
tissue_type
Cell line

Sequenced DNA Library

library_name
ChIP-RUNX2-IP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
20175266
Reads aligned (%)
60.8
Duplicates removed (%)
34.5
Number of peaks
3007 (qval < 1E-05)

hg38

Number of total reads
20175266
Reads aligned (%)
63.5
Duplicates removed (%)
32.4
Number of peaks
3083 (qval < 1E-05)

Base call quality data from DBCLS SRA