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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RUNX2
wikigenes
PDBj
CellType: CAL-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX144853
NextSeq 500 sequencing of SAMD00144947
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
RUNX2
Cell type
Cell type Class
Blood
Cell type
CAL-1
NA
NA
Attributes by original data submitter
Sample
sample_name
CAL1-RUNX2-IP
tissue_type
Cell line
Sequenced DNA Library
library_name
ChIP-RUNX2-IP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
20175266
Reads aligned (%)
60.8
Duplicates removed (%)
34.5
Number of peaks
3007 (qval < 1E-05)
hg38
Number of total reads
20175266
Reads aligned (%)
63.5
Duplicates removed (%)
32.4
Number of peaks
3083 (qval < 1E-05)
Base call quality data from
DBCLS SRA