Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

sample_name
Vav-Cre_Phf6f-y_HSC_rep.1
age
12 weeks
cell_type
hematopoietic stem cell
replicate
biological replicate 1
strain
C57BL6/NCR
tissue_type
bone marrow

Sequenced DNA Library

library_name
Vav-Cre_Phf6f-y_HSC_ATAC-seq_rep.1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
22343510
Reads aligned (%)
98.4
Duplicates removed (%)
70.9
Number of peaks
15438 (qval < 1E-05)

mm9

Number of total reads
22343510
Reads aligned (%)
98.3
Duplicates removed (%)
71.0
Number of peaks
15448 (qval < 1E-05)

Base call quality data from DBCLS SRA