DRX114637
HPAEC-03419 ChIP-Seq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HPAEC
Tissue
blood vessel
Lineage
mesoderm
Description
pulmonary artery endothelial cells.

Attributes by original data submitter

Sample

sample_name
IHEC36-03419
age
28
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD), UT_RCAST
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Head trauma,Self-inflicted gunshot woulnd (SIGSW)
cell ontology
pulmonary artery endothelial cell
cell ontology uri
http://purl.obolibrary.org/obo/CL_1001568
cell type abbreviation
HPAEC
cell_type
Human Pulmonary Artery Endothelial Cells
collection_date
2013-07-01
donor_id
JTK024
ethnicity
Caucasian
health_state
dead
ihec ref
JTK024
label
IHEC36
lot number
3419
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
523125
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
92%

Sequenced DNA Library

library_name
WadaLab-IHEC36-I3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43316320
Reads aligned (%)
98.8
Duplicates removed (%)
3.8
Number of peaks
1376 (qval < 1E-05)

hg19

Number of total reads
43316320
Reads aligned (%)
98.0
Duplicates removed (%)
5.0
Number of peaks
1237 (qval < 1E-05)

Base call quality data from DBCLS SRA