Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

sample_name
HL60_H3K4me3_shOGT_0h
cell_line
HL60

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
20582878
Reads aligned (%)
96.5
Duplicates removed (%)
16.2
Number of peaks
13999 (qval < 1E-05)

hg19

Number of total reads
20582878
Reads aligned (%)
95.7
Duplicates removed (%)
17.0
Number of peaks
13989 (qval < 1E-05)

Base call quality data from DBCLS SRA