DRX090761
Illumina HiSeq 3000 sequencing of SAMD00084344

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POLQ

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sample_name
ctrl-PolQ
cell_line
HCT116

Sequenced DNA Library

library_name
ChIP-ctrl-PolQ
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
33348675
Reads aligned (%)
97.3
Duplicates removed (%)
10.6
Number of peaks
562 (qval < 1E-05)

hg38

Number of total reads
33348675
Reads aligned (%)
98.3
Duplicates removed (%)
10.0
Number of peaks
380 (qval < 1E-05)

Base call quality data from DBCLS SRA