DRX090760
Illumina HiSeq 3000 sequencing of SAMD00084343

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD51

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sample_name
ctrl-Rad51
cell_line
HCT116

Sequenced DNA Library

library_name
ChIP-ctrl-Rad51
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26665618
Reads aligned (%)
98.4
Duplicates removed (%)
7.9
Number of peaks
337 (qval < 1E-05)

hg19

Number of total reads
26665618
Reads aligned (%)
97.4
Duplicates removed (%)
8.5
Number of peaks
536 (qval < 1E-05)

Base call quality data from DBCLS SRA