Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
DRS014288
age
newborn
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Alive
cell ontology
endothelial cell of umbilical vein
cell ontology uri
http://purl.obolibrary.org/obo/CL_0002618
cell type abbreviation
HUVEC
cell_type
Human Umbilical Vein Endothelial Cells
collection_date
2013-06-01
donor_id
JTK018
ethnicity
Arabic
health_state
alive
ihec ref
JTK018
label
IHEC30
lot number
3321
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
380000
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
92%

Sequenced DNA Library

library_name
WadaLab-IHEC30-F1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
44735392
Reads aligned (%)
99.0
Duplicates removed (%)
4.3
Number of peaks
1524 (qval < 1E-05)

hg19

Number of total reads
44735392
Reads aligned (%)
98.2
Duplicates removed (%)
5.8
Number of peaks
1470 (qval < 1E-05)

Base call quality data from DBCLS SRA