Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: HUVEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX069895
ChIP-seq HAoEC (Lot.No. 3324) H3K27me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
sample_name
DRS014288
age
newborn
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Alive
cell ontology
endothelial cell of umbilical vein
cell ontology uri
http://purl.obolibrary.org/obo/CL_0002618
cell type abbreviation
HUVEC
cell_type
Human Umbilical Vein Endothelial Cells
collection_date
2013-06-01
donor_id
JTK018
ethnicity
Arabic
health_state
alive
ihec ref
JTK018
label
IHEC30
lot number
3321
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
380000
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
92%
Sequenced DNA Library
library_name
WadaLab-IHEC30-F1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
44735392
Reads aligned (%)
99.0
Duplicates removed (%)
4.3
Number of peaks
1524 (qval < 1E-05)
hg19
Number of total reads
44735392
Reads aligned (%)
98.2
Duplicates removed (%)
5.8
Number of peaks
1470 (qval < 1E-05)
Base call quality data from
DBCLS SRA