DRX048539
HScAEC-NA ChIP-seq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Subclavian artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC56
age
40
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Subclavian Artery Endothelial Cells
collection_date
2014-05-14
donor_id
JTK036
ethnicity
Caucasian
health_state
dead
ihec ref
JTK036
label
IHEC56
lot number
3971
sample_type
Primary Cell
sex
female
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
WadaLab-IHEC56-INP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45471636
Reads aligned (%)
99.0
Duplicates removed (%)
3.8
Number of peaks
1635 (qval < 1E-05)

hg19

Number of total reads
45471636
Reads aligned (%)
98.2
Duplicates removed (%)
5.6
Number of peaks
1485 (qval < 1E-05)

Base call quality data from DBCLS SRA