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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Subclavian artery endothelial cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX048538
HScAEC-NA ChIP-seq H3K9me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Cardiovascular
Cell type
Subclavian artery endothelial cells
NA
NA
Attributes by original data submitter
Sample
sample_name
WadaLab-IHEC56
age
40
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Subclavian Artery Endothelial Cells
collection_date
2014-05-14
donor_id
JTK036
ethnicity
Caucasian
health_state
dead
ihec ref
JTK036
label
IHEC56
lot number
3971
sample_type
Primary Cell
sex
female
tissue_type
the endothelium of blood vessels
Sequenced DNA Library
library_name
WadaLab-IHEC56-E1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
49689903
Reads aligned (%)
98.8
Duplicates removed (%)
6.1
Number of peaks
1918 (qval < 1E-05)
hg19
Number of total reads
49689903
Reads aligned (%)
97.7
Duplicates removed (%)
8.2
Number of peaks
1631 (qval < 1E-05)
Base call quality data from
DBCLS SRA