Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Subclavian artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC56
age
40
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Subclavian Artery Endothelial Cells
collection_date
2014-05-14
donor_id
JTK036
ethnicity
Caucasian
health_state
dead
ihec ref
JTK036
label
IHEC56
lot number
3971
sample_type
Primary Cell
sex
female
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
38029314
Reads aligned (%)
99.2
Duplicates removed (%)
3.5
Number of peaks
22690 (qval < 1E-05)

hg19

Number of total reads
38029314
Reads aligned (%)
98.6
Duplicates removed (%)
4.7
Number of peaks
22576 (qval < 1E-05)

Base call quality data from DBCLS SRA